NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000584

Scaffold Ga0190309_1000584


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000584 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10257
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016235Metagenome248Y
F024941Metagenome203N
F028993Metagenome189N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100058415F009582N/AMVERRGRRPFVGGTGREVKEAKVDVVLQRVEEKIGRELNVVPSHVYRYGVNNIFQRTFAYLLGWKTDGEPQKVAVTEGGLLKVGISGAGFEEIDVLKGTATVNWSDTLEFAWIPNRIRFEAIDYPYIAKFSRDNVTWSEEVYVDGETPRDFDICAKYVKVRRYGGSDATYWIIGMR
Ga0190309_100058416F011723GGAGMIYNKGLSGENSTNEGKKIFSLISKPEEKVKVRRIVITDVLSNPLIMEIWVERDRIGEAIPLEVISDATPERIIDVDAEIPEGYEFSIVIKPQTSGNQGSVRGWVEYEIVR
Ga0190309_100058418F028993AGGTGGMADIVEKAVKKRSERIAVSEAYYREGVEHPTKDWLEEFKKAKDRRNAGLRRAMDEGLFEIGAERVGTDGWQRATLAKADRWLSGATSAEANEKYEEAMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRKRR
Ga0190309_10005842F024941AGGAGGMAYYFWERLGITKGEQYRQLLERAFKLGWSQRRTFTEARRLGLGYTEALMREDWHRFSYVESARTYTGKLRVHDFFDGVVAKLHYEKKWSWKEIREFLKERKEPAKWTPETKAKEKVFREYAKKVFPELYPD
Ga0190309_10005843F016235AGGAGGMSEKQIPSSPPLFKHKRWKHRHGYQRCVEYVGIDKNDDYFGRGFPLCAVIKFRRNIYRYCPRTYELARLLATLKLLYGEEYMEELFAWMELKYVRMRREKKWLTISGND
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