NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000654

Scaffold Ga0190309_1000654


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000654 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9520
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026175Metagenome198N
F038025Metagenome166Y
F072933Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100065410F072933N/AMNTQVVTLLDLAHLNPNTTSDLGSSVNLGSAIKCAITSQAYFRENASENVRILIMSSADDSDYDTEPYAQWDIPVNGNHTVRTTYTVLPDPKYIKAQAINLDPNVTADSIKVIATYTEP
Ga0190309_100065411F026175N/AMALQSIKILNIGKDNMTRLLTGLDDPYHYKAIGVGNSGTAAQETDEHLLGSETNFKDGNASHYQNDNGSYVAQWNSTWVYDDLPSNQISEAAVAKNASNGTNVCLLRCTFDTVTLDTDSSFSLTLRVIPTQG
Ga0190309_10006548F038025N/AMARFTGLIGDAEILRRSFWWLYQKGWISKERVSEEDYRGLGLKFPDGCERFDREEIREERYVRTRLGKRISLEQLKELI
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