NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000655

Scaffold Ga0190309_1000655


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000655 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9512
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F040421Metagenome161Y
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_10006551F019935AGGAGGMPKVKETANRVVVHVGDLWKKYHRASPKVRKRWQFRIKDVGRVKHSELILCKPPNKDWQVYAWSFSKSQVKKGKRSLLVYDAKAFEILQGLKEGGELRGWKLVFRE
Ga0190309_100065512F019588AGGAGGVSEEKRIEEEVEKIMKDLKVPFSVKVVIIDDRSGKVVFEWRRGKGNLVKGVQKTIEVVEKKIGIPVRSLLK
Ga0190309_100065513F040421GAGMKGENVRVVVMLTLAFVLGFKSIALYLQHSFKLATLLFLLTWTCICFALPDVLIGADISKHLKLK
Ga0190309_100065517F017081GGAGMWKRRWWRGICIFTVLVFLITTAQAIDITEITVTETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGIYTITATFLKVNTTYYVKVCDSENCSDVVSVSVSEKEQLTSQNFTSQFNTLIQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLIAGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190309_100065518F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHIFPVDYVDASAVQTPTDWNLQEVENQTASQSIFDKVMLATDMLFKALTMFFNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
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