NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000687

Scaffold Ga0190309_1000687


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000687 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9288
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F015290Metagenome255N
F024453Metagenome205Y
F056226Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100068710F024453AGGAGGVKVEIPDRDAAVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSICSEEISEVGEEVKSVREDGRERDMEKVRSVHELAQVRRANAKQQGTSR
Ga0190309_10006876F056226AGGAGGMRAYDILLFLVCLEASIGFVASIDLFSTTYVEPSAVQLTNWNVQEIQNQSSELSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0190309_10006878F007460AGGTGGMDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTSIVGIDETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0190309_10006879F015290AGGAGGMLNNKGQAGEIAVFAILVFMVAFAYIFISPIVQNIKDVVPIVADATSWTNAQAQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
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