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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021498 Open in IMG/M |
| Scaffold ID | Ga0190309_1000743 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8885 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5931 | Alt. (m) | Depth (m) | 1999 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F014691 | Metagenome | 260 | N |
| F015290 | Metagenome | 255 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F024453 | Metagenome | 205 | Y |
| F040421 | Metagenome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190309_100074310 | F014691 | AGGAGG | MSRGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR |
| Ga0190309_100074311 | F040421 | GAG | MREEGVRAITMLMLAFTIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDQLIGASIGQDLKLKGVIEK |
| Ga0190309_100074312 | F019588 | AGGGGG | MSGEKRIEEEVKEILERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEILDRKMGIPVKDLLK |
| Ga0190309_10007432 | F024453 | AGGAGG | VKMEIPERDAVVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVMERGESGREEGIQKDVEKVRSVHELAQVRRANAKQ |
| Ga0190309_10007433 | F015290 | AGGAGG | MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVIPTVADATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV |
| Ga0190309_10007434 | F007460 | AGGTGG | MDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKKHKYTYYQQGGEEEKW |
| Ga0190309_10007437 | F017081 | GGAG | MEERGRKWWWKGICILGILTFLIATAQAIDITEITATETQIKVTIANASSSGYIFVSPSNKSFPYAYSHQGNGTYIITATFLKVNTTYYVKACDNENCSNVVSVNVSKEEKLVEQNFTAPFNNLMQGGNFLNISKLGETIPSVYTSLLTDMFWAMLFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |