Basic Information | |
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Taxon OID | 3300021498 Open in IMG/M |
Scaffold ID | Ga0190309_1000782 Open in IMG/M |
Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8674 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (90.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Guaymas Basin | |||||||
Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5931 | Alt. (m) | Depth (m) | 1999 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023017 | Metagenome | 211 | Y |
F029623 | Metagenome | 187 | Y |
F035145 | Metagenome | 172 | Y |
F042112 | Metagenome | 158 | N |
F049343 | Metagenome | 146 | Y |
F050065 | Metagenome | 145 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0190309_100078213 | F029623 | GAG | MNTYTKYTRARFERGNLIVEVSKDAFKDAEAKKETVRELQQIIKAYFGIRFFIRLSIVYAFTALFCAFVALIIVLLK |
Ga0190309_100078216 | F049343 | AGGAGG | MVEWSRLRDKLRKGEWYAFSAVCFLAGVVAGREITLLAKPEPILALIGVGVGVLAYLLLLLTATIIADIKERRKAPKTI |
Ga0190309_100078217 | F035145 | AGGAG | MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQQSTLKALIEALEKVKEVMENGGMEQIER |
Ga0190309_100078218 | F050065 | GAG | LSSQYQMRKNGVMNMLKATASMEQIMLTIAYLKGLLRDAKRRGDKELVRYVGEIIGVYEARLQPQNNNN |
Ga0190309_10007824 | F042112 | AGGAGG | MSYDDFSLSSLYEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRAEIDVKTEECRKKMEREISRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML |
Ga0190309_10007829 | F023017 | GGAGG | VRLKKEKREEMKQRIVEFLKNADGHIASIPMLARAIQASSPTARSIVFELEVERKVSVVMLGGEYVVKLEEEGGEQA |
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