NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1001176

Scaffold Ga0190309_1001176


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1001176 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6934
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F040421Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190309_10011761F017081N/ACILGIFTFLIATAQAIDITEITATETQIKITIANATSSGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSNVVSVNVSKEEELVGQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190309_100117611F019935GAGGMPKVKETLNRVVVHVGDLWKKYHRASPKVRKRWKFRIKDVGRLKHSELILCKPPNRDWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG
Ga0190309_10011764F014691GAGGVSRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSIAATSNIIPTLTSFLPYLALVVILAMAIGVFLSLVRGR
Ga0190309_10011765F040421GAGGMKGESVRAITMLTLAFIIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDNLIGASIGQDLKLEGVIEKWVRRRELRRK
Ga0190309_10011766F019588AGGGGGMGEEKRIEEEVKEVLERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVKDLLK
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Institute for Fundamental Biomedical Research
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