NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1001748

Scaffold Ga0190309_1001748


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1001748 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5505
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F049343Metagenome146Y
F050065Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100174810F035145AGGAGMLEASSEFTRRGYNLKTVTTEDEFGLMKVQVICLTANTTFPLLTLSYNKCTKHFVLAIERRFVTQKSTLQALTEALEKVKEVMKNGEMEQIER
Ga0190309_100174811F049343AGGAGGMVRWSRLRDKLRKGEWYAVSVVCFIAGIVAGKGITVLGRAEPVLMLTGVGAVLLAYWVALLIATIAASVKEEA
Ga0190309_10017483F029954AGGTGGMELRVKEYKFNNGERKVEYVIPPTNTPFFSVVFSKEGGVRMIAIHQRVFEYHEAVVLMSLLCGVIRNEGESTKS
Ga0190309_10017489F050065GAGVSGEVEKILLAITYLESLLRDAKRRGNEELVKYVGGVIRIYKERLQSQNSNN
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