NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1006261

Scaffold Ga0190309_1006261


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1006261 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2732
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035145Metagenome172Y
F049343Metagenome146Y
F050065Metagenome145Y
F084954Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0190309_10062613F084954N/AVPRTCPNVKGGDISRDEKKMRLERFLRRFAERAKAVLTHKSKGFNDMVMIATAIVSTVVVAIIGVYISSQIYDVTQLSSDSPFNTAMNSAIRIMNTTYPLIIVVAIAIIAGIIMTYLLGGFGVGGKKGGGEAK
Ga0190309_10062614F049343AGGAGGMVEWSRLRDKLRKGEWYAFSAVCLIAGVVAGREITLLAKPEPVFALTAVGAVLLAYWLALLTATIIAEIKERRKEAPKTI
Ga0190309_10062615F035145AGGAGGMLEKLSAFMRRDYNLKTVITEECCDLMRVEVICFTAKTSFPLLTLTYNKLTDNFVLTIERKFITQQSTLKALIEALESVKEVMENGGMEQIER
Ga0190309_10062616F050065AGGAGGMLKATVSIEQIMLTITYLKGLLREVKRRGDEEVARYVGEIISVYEARLQSQNSNN
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