NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1013626

Scaffold Ga0190309_1013626


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1013626 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1719
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F091134Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0190309_10136263F023017AGGAGGMRLSKEKREEMKEKVIEFLKNADGHIASIPMLAKAIKASPPTAKSIVEELEVEKRVKLTTLGGAYVVQLKEEVNDCE
Ga0190309_10136264F091134N/AHSDIIALASSYTVLVAFASQLPLAHGRYYECLIPILLIPAFDEFARSRAKTIALCVVAYLFFALPTLIHADLVNTSLTLPITLSIVLTPLTVFAIAFALLHAYILTRSEKKRCVVALSLFVFILIGSSVASLYNMHKISKQERECVVFKVLKQNSGEDVAFLADMREWWANYCLCCFYAQHFLPLNSSPTTKYLIVEKKGINEGQKHIARLERCGGRDEVLIVERVK
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