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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021499 Open in IMG/M |
| Scaffold ID | Ga0190337_1000028 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-10-11_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25600 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (83.67%) |
| Novel Protein Genes | 15 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 15 (100.00%) |
| Associated Families | 15 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F014691 | Metagenome | 260 | N |
| F015290 | Metagenome | 255 | N |
| F017081 | Metagenome | 242 | Y |
| F019935 | Metagenome | 226 | Y |
| F023017 | Metagenome | 211 | Y |
| F029623 | Metagenome | 187 | Y |
| F029954 | Metagenome | 186 | N |
| F035145 | Metagenome | 172 | Y |
| F040421 | Metagenome | 161 | Y |
| F042112 | Metagenome | 158 | N |
| F050065 | Metagenome | 145 | Y |
| F055335 | Metagenome | 138 | N |
| F066330 | Metagenome | 126 | N |
| F072934 | Metagenome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190337_100002812 | F040421 | GAGG | MREESVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLEEVIEKWVRRRELKRK |
| Ga0190337_100002813 | F014691 | AGGAGG | MSKGIGFVSAILILMFVIVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR |
| Ga0190337_100002817 | F017081 | GGAG | MVERKGWWKGICILGILTFLITTAQAIDITQITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVISVNVSKEEELLEQNFTAPFNNLMQGGNLLNISKLGEIIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0190337_100002818 | F055335 | AGGAGG | MRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYMVYAWAIIQFLSGRSVKYME |
| Ga0190337_100002820 | F007460 | AGGTGG | MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILSPLTTIVGIDEIAPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW |
| Ga0190337_100002821 | F015290 | AGGAGG | MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTISDATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV |
| Ga0190337_100002826 | F042112 | GGA | MTFDEYSSAFPQFEEKYISKIAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML |
| Ga0190337_100002832 | F023017 | GAG | MRLKKEKREEMKQKIIEFLKNADGHIATIPMLARAIQASSPTAKSIVWELEVERKVSVVMLGGEYVVKLEERVIKDDY |
| Ga0190337_100002834 | F029623 | GAG | MNTYAKYVRARFERGNLIVEVSKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALIIVLLK |
| Ga0190337_100002839 | F035145 | GGAG | MLEKLSEFMRRDYNLKTIITEECSDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTIERKFITQHSTLKALIEALESVREVVKGNASF |
| Ga0190337_100002840 | F050065 | GGA | MNMLKATVSMEQIMLAITYLKGLLRDAKRRGDRELVKYVGEIIGVYEARLQPKNNNN |
| Ga0190337_100002844 | F029954 | AGG | MELRTKEYKFNDGEKKVEYVIPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ |
| Ga0190337_100002847 | F066330 | GGAG | MAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKKAVEEVLQARSEK |
| Ga0190337_10000285 | F019935 | AGG | MPKVKETANRTVVHVGDLWRRYHRASPKTKRQWKFRIKDVGRLRHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKESGDLRGWKLAFKG |
| Ga0190337_10000287 | F072934 | GAGG | MVEIDIDKLLADEEMRKKMNGWNRETAKRRLESMKNLSEPHRRYLEKIASGEWEVW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |