NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190307_1000073

Scaffold Ga0190307_1000073


Overview

Basic Information
Taxon OID3300021502 Open in IMG/M
Scaffold IDGa0190307_1000073 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33384
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (54.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026175Metagenome198N
F038025Metagenome166Y
F072933Metagenome120Y
F084955Metagenome111Y
F093028Metagenome106N
F096386Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190307_10000732F096386N/AMSKALSIRPSEFLDPYFEEDAITRFAIDLIVLVSDVEEHEREIPNIEEQTDSLRKRDLEFKRKYNITLEQAKKIVFGDRDGSGGR
Ga0190307_100007320F026175AGGAMALKSIKILNTGKENITKLLVGMDSPYSYKAIGVGNSATEAAETDEHLLGSETNFKDGNTSYYKNANGSYVAQWNSTWVYDDLPSNQISEAAVAMNATNGTTSCLLRCTFDTVTLDADSSFALTLRVIPTQG
Ga0190307_100007322F038025N/AMKRFTGLIGDAEILRKSYWWLYQTGWISKDSVSEEDYKDLGLKFPDGCERFDRKEIREERYVRTRLGKRISLEQLKDLI
Ga0190307_100007323F072933N/AMQTNTTAVLDIANLPPNTTSDLYGPVNLGNSIKCAITGQAFFNQSAVDNVRTMILSSWDDSSYDTEPYAQFDIPCNPNQTVRTTYAVLPDPKYIKAQVVNLDSNYTAESVRVIVTYTEP
Ga0190307_10000733F093028N/AMEMNLEEYKKWKSPKELELPSGLKIKVRDLSPWDLLVAASKQKEYKPNDPQLIEYLMKKFIVWPQIGKDWEIEDIRPDDYVFLQNKLFESFSLERFDTAVKSVEKIKEENKDFSE
Ga0190307_100007337F026175N/AMALQSIKLLNTAKDNITKLLTGLSGAYSYQGIGVGNHTAAAAETDEHLLGDETSFKDGNMSAFKNANNSYIAQWNSTWVYNDLPSNAISEAAISMNASNGTTACLLRCTFDTIYLDADSSFSLILQVCPTQG
Ga0190307_100007344F084955AGGAGGMSYLTAEALDRMFKLCPNTLKNLDQDAQALAEEVISKYNSQPKHSAEKLISIAISTVAKYLLTDRAKEEELDALLIYFESLFAGETENPVEALIGVFTYYLLAKPYFDSYRHLISSYVFDEIDLGEVA
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