NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190307_1000190

Scaffold Ga0190307_1000190


Overview

Basic Information
Taxon OID3300021502 Open in IMG/M
Scaffold IDGa0190307_1000190 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19496
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F017081Metagenome242Y
F024453Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0190307_10001903F024453AGGAGGMKMEIPDRDAVVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREGDMDNVRSVHELAQVRRANAKQ
Ga0190307_10001905F007460AGGTGGMSDEEGIGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNIVGVDETSPFAPALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQGGEEEW
Ga0190307_10001908F017081GGAGMRKRGRKWWWKGVCILGVLIFFVATAQAIDITEITATETQIKITIANATSNGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKPNNTYYVKACDNENCSIVVSVNVSKEEELVKQNFTSQFNTLMQSGNLLNISKLGETIPSVYTSLLTDMFWAMFFGVIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
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