NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190307_1000552

Scaffold Ga0190307_1000552


Overview

Basic Information
Taxon OID3300021502 Open in IMG/M
Scaffold IDGa0190307_1000552 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10638
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F028993Metagenome189N

Sequences

Protein IDFamilyRBSSequence
Ga0190307_100055218F028993GGTGGVEKAVKKRSERIAVSEAYYKEGVASPSKDWLEEFKKAKDRRNAGLRKAMEEGRFEQGAERVGTQGWQSATLNKADRWLTGATSEEANEKYAERMRDVAECIERAKKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEEKRKRR
Ga0190307_10005523F016235AGGGGGMSEEKISSSPPLFLHKRWSHRRGYQKCVKYIGIDRNDETFGRGFPLCAVIKFRIPIYRYTPRTSEIAKLLATLRILYGEEYMEELFALAEVEYLKMRRERKWHIHFGENSD
Ga0190307_10005525F024940AGGMKREIIYKKIRKANELREFITDALIEHAERRASALIQQNINLFYYEQGFLDALKTVRDLLSKEGLLMYRYVYEEKREREEDEHRDTF
Ga0190307_10005527F016098AGGAGGMSEERRYVYMRRTQSGNGVRMRDGEIVYVASIRSLEAFLHGEREFVAFMRFPYRQIPNENAERNILYTYCDKCGAGRFFRKVGEDKWKCETCGTERTTTELIEKMRSILETD
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