NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190307_1002365

Scaffold Ga0190307_1002365


Overview

Basic Information
Taxon OID3300021502 Open in IMG/M
Scaffold IDGa0190307_1002365 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4786
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F040961Metagenome160N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0190307_100236512F091133N/AWVDDIAKYWVKQADMFFDILKHTWSDVENLMEQAKSYADDIVTDAILKIDNWVATFGETVAELWDKLEPYFSSVITPIENAIDTIQNIKIPSLEDITNTLKSTVDNIVNWDIPFLNQSVSDLWNEANKIWDEIWNNIWTSLNNAWDDINNIWNTLAEIPADVWNAITEGWEGFSDFLLSQGERFVEKILDIDIPVDDIIEDLERKFKGGGE
Ga0190307_10023652F016235AGGAGGMDKSKISSFPPLFFHKRWSHRRGYQKCVKFIGIDKNDERFGRGFPLCAVIKFRIPVYRYTPRTQEIAKLLATLRILYGEEYMEELLAWTELEYVRMRRRAEWLTHFGDGSD
Ga0190307_10023653F040961GAGMVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFGLTDADIAKCEELAWLYVEF
Ga0190307_10023655F024940AGAAGGMEREIIHKKIRSIKELREFITDYLIEHSEMRAKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEEQKREEDENRDTF
Ga0190307_10023657F016098AGGAGGMSEERKFVYMRKTRSGNGVRMRDGEIVYVASIRSLEQFLQGEQEYVAFAKMPYRRIPNEDNARNLIYTWCDKCQGLRFFRKVSEDKWRCETCGTERTATELIEKVRSILETD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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