NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190307_1013897

Scaffold Ga0190307_1013897


Overview

Basic Information
Taxon OID3300021502 Open in IMG/M
Scaffold IDGa0190307_1013897 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1761
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0190307_10138972F024941AGGAGGMAYAFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARERGLGYAEKLMREDWHQFGYVERARTYEGKLTQHIFFDEVVKKLHDKEGWSWKEIKEFLNERKRPERWTPETKVKEKIYKSYLREALPEKADT
Ga0190307_10138973F016235AGGAGGMSEIKISSSPPLFSHKKGRHRHGYQRCVAFVGIDKNNEWFGSGFPLCAVIKFDFPIYRYTPRTYELARLLATLKILYGEEYMEELLAWAKLEYVRMRRRREWLTLSGDGSE
Ga0190307_10138974F040961AGGCGGMVNAAECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFGFTDADIAKCEELAWLYVEF
Ga0190307_10138975F024940GGAGGMEREIIHKKIHSVKELREFITDALIEHAEKRGSALIHGNNNLFYYEQGFLDALKTIRDLLSKEGLLMYRYVINEEEERTEDKNRDTF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.