NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190316_1002919

Scaffold Ga0190316_1002919


Overview

Basic Information
Taxon OID3300021507 Open in IMG/M
Scaffold IDGa0190316_1002919 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5330
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F048033Metagenome148N
F057026Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0190316_10029191F057026AGGMRGRRKMGRDEQIQVLEEMVCLFEKAMEGLKSAYEAAEDEKQKIKLAGGILVFEFVINLMKQKMELLWN
Ga0190316_10029194F033663AGGAMVQESSEEDVTQVYGIRCKVEDEEIRDWDYDSLTNITFLYKQRRALFKDIQEDGMAVPEFFFEIKRDMLMLRDLVSGKFNILLVIEEEN
Ga0190316_10029197F048033AGGAGGMIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARFMGEEDTLYVRQVEGEDLSENMQKLIKNFQNAGKTIEYMDKDRYDAYKGEVHFHTENFENEE
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