NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190316_1003848

Scaffold Ga0190316_1003848


Overview

Basic Information
Taxon OID3300021507 Open in IMG/M
Scaffold IDGa0190316_1003848 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4644
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0190316_10038482F024941AGGAGGMAYYFWGRLGLTKGEEYRKLLERAWNLGWSQRRFFREARERGLGYAEKLMREDWHRFGYVERARTYEGKLTQHIFFDEVVKKLHDKEGWSWKEIKEFLNERKQPERWTPETKVKEKIYKSYLREALPEKADT
Ga0190316_10038483F016235AGGAGGMSEVKISSSPPLFFHKKGRHRHGYQKCVEFVGIDKNNDYFGEGFPLCAVVKFKHPIYRYAPRTYELARLLATLKILYGEEYMEELLAWAELEYVRMRRRRVWLTISGDGSD
Ga0190316_10038486F024940GAGMEREIIHKKIRSIKELREFITDYLIEHSEMRTKAMITANTNVVFYEQGWMDCLWTIRNLISKEGLLMYRYAFEEKQEREEDEHRDTF
Ga0190316_10038487F016098AGGAGGMSEERKFVYMRKTQSGQGVKMRDGEIVYIASIRSLEAFLQGEQEYVAFAKMPYRRIPNEDNARNLVYTWCDKCQGLRFFRKISEDKWRCEMCGTERTATELIEKVRSILDEGEQ
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