NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190316_1006708

Scaffold Ga0190316_1006708


Overview

Basic Information
Taxon OID3300021507 Open in IMG/M
Scaffold IDGa0190316_1006708 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3506
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F048033Metagenome148N
F057026Metagenome136Y
F096388Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190316_10067083F096388GGAGGMIKIPILDNRENRNWFHQFEHPAYTMLGGNNKSVERKLKQDMKQLKWREWWRNPRKKIDLLSGTEDGCRWRVRLLVNSFGDVSVVFDFT
Ga0190316_10067085F048033AGGAGGMIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTENMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVQFHTENFEEE
Ga0190316_10067088F033663AGGAMLLKGDWEIMEQESSDENVTQVYGIRCKVEDEEIREWDYDSLTNITFLYKQRCALFEDIWEDGMAVPEFFFEIKRDMLMLRDLVLGKFNILLVVEEEN
Ga0190316_10067089F057026AGGAGGMGRDEQIQVLEEIVCLFEKAMEGLKSAYGSTEDENQKLKLKGGILVFEFVINLMKQKMELLGNEE
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Institute for Fundamental Biomedical Research
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