NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190316_1010309

Scaffold Ga0190316_1010309


Overview

Basic Information
Taxon OID3300021507 Open in IMG/M
Scaffold IDGa0190316_1010309 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2755
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F069552Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0190316_10103093F038026GGAMIDKNEDEYILIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSYHAKIEIM
Ga0190316_10103097F069552AGAAGMKKNSIAWFVVECSKSITIQLRCFKCRFMFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCEEEYFLNNIVETDVNSRGFGTANIEVETTIPNDEEYQRLRKLINDWYKQKVDTFPFFLGIVMYSSYRDWRRMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSTPPKFLGTTTSWD
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