NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190316_1019693

Scaffold Ga0190316_1019693


Overview

Basic Information
Taxon OID3300021507 Open in IMG/M
Scaffold IDGa0190316_1019693 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1889
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059532Metagenome133N
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190316_10196931F059532N/AMRNILLLGDLHCGSTEGLWHPDFVSREGQRIKLSPLQEELYDKWLLLQEKLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPVYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKN
Ga0190316_10196932F100149N/AMYWSKEEEEILKSLWKKPDITAKIIKEQHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIII
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