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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021509 Open in IMG/M |
| Scaffold ID | Ga0190304_1000112 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36078 |
| Total Scaffold Genes | 79 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (49.37%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5931 | Alt. (m) | Depth (m) | 1999 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036512 | Metagenome | 169 | N |
| F050821 | Metagenome | 144 | N |
| F056227 | Metagenome | 137 | N |
| F059532 | Metagenome | 133 | N |
| F084956 | Metagenome | 111 | N |
| F100149 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190304_10001121 | F084956 | N/A | MRKRTRAICGIAICGYTICGDISYYLPTISSSDIKGVAQITTPDGWFTYFFPLVSGEIILNQPFTDDNAVITIVHNGQLLIDSDVSIHLGKGLKKVIFMGKVKSATQKAIIGKGNIISELECISRFDELAHRYLKEGDQQKYHGTLSEVIQQFISLTGMDITNKSSNDVDIVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKNDEIKYTIDKNSKITNINIETSQEDSYRRCHVRGAKIGEDSAGNDIYITGEAVDEVVASNKEIYIEDDTVLTEWDARQRAEQELKTRNELTDAIEITLADLVYPVFGKVRVNLPGINKILELKSLRYTLDENGLYTTLYLGRSYKSLGTIFRSLK |
| Ga0190304_100011250 | F056227 | N/A | MEDKDNIQVLVFHRDEEDKNWISRLFNGKIAILHRADPTTPQENVPYLCKVDEKEKYAIAWILSLYAYPRIIVTPPPRRYVFLKSPGDKPAIHTDILSIFDTHDLEYLYVKYPKENRKEIEVPSTGNYRDIDIDIRIKIGSESTLKSSFTIKRPRNVDAKTILDEIKNKIK |
| Ga0190304_100011251 | F059532 | GAG | MKNILLLGDLHCGSAEGLWHPDCITREGQKIKLSPLQEELYEKWLELQEKLPNYDAVFLMGDITHGLGSKEFGKDVIDCDLHDQLQCAVKLLKPIVENKKVVVISGSRYHSSIDYDIDRGLAEILNAKFGGAIANVRLKGTGIVINIAHGVGSRPVYLGTRMNQDIFNAILTEHFLKMPDVSVIIRAHFHVYSYFSICNKHFIYIPGWNAIRKNRFATRWYFRQPDIGAVLLSIDDNDDIYVKPYLFKLKSERKNVYIL |
| Ga0190304_100011252 | F100149 | N/A | MFWSEEEIEILKSLWIRSDITSKFIKERYLPHRSIYAIQKKASSLGLTKEKIKIDYDKIREIIL |
| Ga0190304_100011262 | F050821 | GGA | MIVKEMYCNHCKQKTFHECQSNELWRCIQCHNTQFEILDIKEDEIDWSTSTRYVYRSGELAYVTLALAPDVLRLNELKELIEGKRIRVPLFKIKDEFLPKYY |
| Ga0190304_10001129 | F036512 | N/A | MINWKIPDYLKRKIRIQDILKNLFGHCDCGEKLKQCEKDKAYCAKRIKSLSKTLTHSIILPEVIDHRKYVKEIKPWKIIRKVGNFDLVTADKTYYALPVNSWIEVLSSIQPQVEKVLKKWQRDISDCDDFALVTASTVAASFAYDPFERQVAFAIAWSHNHAYNLFITTEGTCEIYEPQSNAIVGRLGKTSGIYETKKIWFMG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |