NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190304_1001382

Scaffold Ga0190304_1001382


Overview

Basic Information
Taxon OID3300021509 Open in IMG/M
Scaffold IDGa0190304_1001382 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10770
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F024940Metagenome203Y
F024941Metagenome203N
F028993Metagenome189N
F067298Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0190304_100138215F016098AGGAGGMSEERKYVYMRKTRSGNGVRMRDGEIVYIASIRSLEQFLQGEQEYVAFARMPYRQIPNENNERNVIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTARELIEKVRAILEAD
Ga0190304_100138217F024940AGGTGGMEREIIHKKIRSIKELREFITDYLIEHSEMRSKAMLAGNTFVIAYEQGFLDALKTVRDLLSKEGLLMYRYVINGEEERAEDKNRDTF
Ga0190304_10013822F028993AGGMGKIVEKASKKRKERIAVSEAYYKEGVEAPSKDWLEQFKKAKDRRNAGLRRAMDEGLFEKGAERVGTEGWQRATLAKADRWLTGATSEEANEKYASAMADVEECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0190304_100138220F024941AGGAGGMAYYFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARARRLGYAEALMREDWHRFGYVESARTYSGKLRAHIFFDEVVKKLREEEKWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYAGNAFPELYP
Ga0190304_10013824F011723GGAGMIYNKGLSRDDSTDEGKEIFSLTSKEEEKYKVRRIVITDVEDNPLIMEIWVERDRIGENIPLEVASDIAPERVIDIDAEIPVGHTFSVKIKPQSSGSQGSVRGWVEYEIVG
Ga0190304_10013825F009582GGTGGMSVRRGRRKFVGGTGREVKEARVDVVLQRLEENIGNEINVYPKHVYRYGVNNIFQRTFAYLLGWKTNGEAQKIAVTNAGLVKVAISGAGFEEIDTLRGTATVNWSSTLQFAWTPNRIRFEALDYPYLAKFSLDGVTWTDEVYVDSDMPRDFDINAKYIKVRRYGGTDAKYFIMGMR
Ga0190304_10013826F067298GAGMAVVIKEEDAGKIIRAFNLKRRIKELEKEIGDLQRKKAKLEAEYQDLGVEIE
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