NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190304_1001770

Scaffold Ga0190304_1001770


Overview

Basic Information
Taxon OID3300021509 Open in IMG/M
Scaffold IDGa0190304_1001770 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9533
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017081Metagenome242Y
F019935Metagenome226Y
F058593Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0190304_100177017F017081GGAGMRKRGRKWWWKGVCILGVLIFFVATAQAIDITEITATETQIKITIANATSNGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKPNNTYYVKACDNENCSIVVSVNVSKEEELVKQNFTSQFNTLMQSGNLLNISKLGETIPSVYTSLLTGMFWAMFFGVIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190304_100177019F058593N/AGINKTIRIYPKADHYTVMLTPTTSSLVSSEDYITFNLSYEIVDDEINLSLTYNDTLNQTKNLTFFVYNSTTLLYQQNFTNTSNVSVSYTVSYKAGEEYMWGYSAYHSNFGNMGRSRILRIAWFLDLGISRTYCTWIAIAIILFLTAMFSFTTVKFGYVAIPMVSLIFAYIGWLPNISIIIIALCLGILAYMSKREKEVGV
Ga0190304_10017704F019935N/AMPKVKETPNRVVVHIGDLWKKYHRASPKVRKRWKFRIKDVGRTKHSELILCKPPNKDWQVYGWSFSKKQVKKGKRRLLVYDVKAFEILQKLKESGELRGWKLVFRG
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