NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190304_1002730

Scaffold Ga0190304_1002730


Overview

Basic Information
Taxon OID3300021509 Open in IMG/M
Scaffold IDGa0190304_1002730 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7444
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F016235Metagenome248Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0190304_100273016F009582GAGMSVRRGRREFVTGTGRAVKEARVDVILQRLEENIGGEINAYPSHIYRYGVNNIFQRSLAYLFGWKTNGEPQKVAVSSSGLLKVAISGAGFEEIDTLEGTAGVSWSDILEFAWTPNRIRFEALDYPYIAKFSKDGATWSDVVYVDNETPRDFDINAKYIKVRRYGGSDARYWIIGMR
Ga0190304_100273017F011723GGAGGVIYNKGLSRENSTNEGKEIFSLASKEEEKYKVRRIVITDVETNPLVMEIWVERDRIGENIPLEVASDLAPERVIDLDVEIPVGHTFSVKIKPQNSGNQGSVRGWVEYEIVG
Ga0190304_10027302F024941AGGAGGMAYNFWGRLGLTKGEEYRKLLERAWNLGWSQRQFFREARARGLGYAEKLMREDWHRFGYVESARTYEGKLTQHVFFDEVVKKLHDKEDWSWKEIKEFLNERKDPRRWTPETKVKEKIYKSYLKEALPEKADT
Ga0190304_10027303F016235AGGAGGMSKVKISSSPPLFSHKKGKHRHGYQRCVYFIGIDKNDDYFGEGFPLCAVIKFKQSIYRYTPRTYEVARLLASLKILYGEEYMEELLAWMELEYRRMRRRAEWLTIFGDDSD
Ga0190304_10027307F016098AGGAGGMSEERKFVYMRKTQNGNGVRIRDGEIVYIASIRSLEAFLQGEKEFVAFAKMPNRRIPNEENARNLIYTWCDKCQGLRFFRKISEDKWRCEKCGTERTATELIEKVRSILDEGEQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.