NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190304_1006967

Scaffold Ga0190304_1006967


Overview

Basic Information
Taxon OID3300021509 Open in IMG/M
Scaffold IDGa0190304_1006967 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4126
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057809Metagenome135N
F096388Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190304_10069673F057809GAGGMQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFSFGVATAREQLAEEFLASGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPIDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEYEHLDDYNRVSEDFFFLLKVQNEAKVKVIYAPSISVGHVGEVIVWDKDNIQFI
Ga0190304_10069677F096388N/AMIKVPILDNKENRNWFHQFEHPVYTMLGGNNKSVERKLKQDMKLLKWREWWRNPRKKIDLLSGTEDGCRWRVRLLVNSFGDVSVVFDFT
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