NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190303_1001232

Scaffold Ga0190303_1001232


Overview

Basic Information
Taxon OID3300021512 Open in IMG/M
Scaffold IDGa0190303_1001232 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10351
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F016235Metagenome248Y
F024941Metagenome203N
F028993Metagenome189N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0190303_10012321F028993GAGMADIVEKAVKKRSERIAVSEAYYKEGVESPSKDWLEQFKKAKDRRNAGLRRAMEEGLFEIGAERVGTEGWKEATLAKADRWLTGATSDVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0190303_100123214F016098AGGAGGMSEERRYVYMRRTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNEESDRDYVYTWCEKCGGLRFFRKISEDKWKCQTCGMEKTVRELINKLRSIMETE
Ga0190303_100123217F040961GAGMVKAAECRWSEEQAKGLLTFLIAEKKRHEKDIHNIERSIQRIKREFGFTDADIAKCEELAWLYVEF
Ga0190303_100123218F016235AGGAGGMDKSKISSSPPLFSHKKGRHRYGYQRCVAFVGIDKNNDYFGEGFPLCAVVKFKQPIYRYTPRTYELARLLATLKILYGKKYMEELLAWTELEYVRMRRRAEWLTHFGGGSD
Ga0190303_100123219F024941AGGAGGMAYTFWGRLGLTKGEEYRKLLEKAWNLGWSQRQFFREARARGLGYAEKLMREDWHRFGFVESARTYEGKLTQHVFFDEVVRKLHDKEGWSWKEIKEFLNERKNPRRWTPETKVKEKIYKSYLREALPEKADT
Ga0190303_10012323F011723GGAGMIYNKGLSRENSTNEGTKIFSLISKPEEKVKVRRIVITDVVSNPLIMELWIERDRIGEAIPLEVIADATPERIIDVDAVVEAGYEFSIVIKPQTSGNQGSVRGWVEYEIVG
Ga0190303_10012325F009582AGGGGGMLRRKGRRPFVSGTGRAVKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRAFAYLLGWKTNGEPQKIAVTESGLVKVGISGAGFEEIDVLKGTATADWSDTLEFLWVPNRIRFEAVDYPYIAKFSKDGVTWSEEVYVDGETPRDFDICARYVKVRRYGGTDATYWIIGMR
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