NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190303_1024945

Scaffold Ga0190303_1024945


Overview

Basic Information
Taxon OID3300021512 Open in IMG/M
Scaffold IDGa0190303_1024945 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1860
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0190303_10249452F016235GGAGGMSNDNIPSSPPLFSHKKGRHRKGYQKCVEYVGIDKNDDYFGEGFPLCAVIKFKRPIYRYTPRTHEIARLLATLKILYGEEYMEELFAWVELEYVRMRRRAEWLTHFGNGSD
Ga0190303_10249453F040961AGGCGGMVNAVECRWSEEQAKGLLTFLIAEKKRHEKDIHHIERSIQRIKREFSLTDADIAKCEELAWLYVEW
Ga0190303_10249454F024940AGGAGGMEREVIYKKIRSIKELREFITDYLIEHSEMRAKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFNEEQKREEDENRDTF
Ga0190303_10249456F016098AGGAGGMSEERRYVYMRRTQSGQGVKMRDGEIVYIASIRSLEQFLQGEREFVAFAKMPYRQIPEEERDRDFIYTYCDKCEGLRFFRKISEDKWKCQTCGIERTAWELINKLRSILETD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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