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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021513 Open in IMG/M |
| Scaffold ID | Ga0190315_1000084 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55148 |
| Total Scaffold Genes | 88 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0118 | Long. (o) | -110.5962 | Alt. (m) | Depth (m) | 2005 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036512 | Metagenome | 169 | N |
| F076704 | Metagenome | 117 | N |
| F084956 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190315_100008410 | F076704 | GGAGG | MPEFGAVKGWKNRVRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKVFVVGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEFIYAGNNSHLDLLAATGMYGESLQSCKILMNTTSSSNSADYNRVIYGVKFHSYRTSTAAGDLVTESVDYDATNISTH |
| Ga0190315_100008418 | F084956 | N/A | MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQVTTPDGWFTYFFPLVRAEIILNQPFTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTVMGKGNIMSELNCVSRFDELAHRYLKEGDQKDFRGTLSEVIQQFISVAGMDIENKSANSADMVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKTDEIKYTLDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEVTLADLVYPVFGKVKVNLPGIAKILELKSLRYTIDDNGLFTTLYLGRSYKSLSTIFRSLK |
| Ga0190315_100008425 | F036512 | AGGAGG | LVFVGGLIKMYWKVPNYLKKYVRIQDMLRNIFRPCDCGEELKKCIEDKEYFARRAETLSRALAKSINLPEPPDPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPVQTQIEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSHSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |