NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190315_1000747

Scaffold Ga0190315_1000747


Overview

Basic Information
Taxon OID3300021513 Open in IMG/M
Scaffold IDGa0190315_1000747 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14787
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F015290Metagenome255N
F024453Metagenome205Y
F042112Metagenome158N
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0190315_100074711F024453AGGAGGVKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREGDMERVRSVHELAQVRRANAKQ
Ga0190315_100074712F015290AGGAGGMLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPVIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0190315_100074713F007460AGGTGGMDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGIGETSPFARALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0190315_100074715F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIIAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0190315_10007477F042112GAGGMSYDDFSPSFLQEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVRERVGITTYREMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML
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Institute for Fundamental Biomedical Research
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