NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190315_1001334

Scaffold Ga0190315_1001334


Overview

Basic Information
Taxon OID3300021513 Open in IMG/M
Scaffold IDGa0190315_1001334 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10165
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0190315_100133411F091133GGTGGMGIFDVWSSWTDWLSDWWDAFKDKVWDIKCELWSWVDDIAKYWVARANEWFDILNHTWSEVEDLMEGAKTYADGIVTDAILKIDNWITTFGETVAELWDKLEPYVSGLITPIENALDTIQNIKIPSLEDITNALNESVNNILNWDIPFLNQSVNDLWNEANKIWDEIWNNIWTSLNNAWDDINNIWSTLAEIPADVWNAITEGWEGFSDFLLSQGVRFVEKILDIDLPVDDIIKDLERKFKGGGE
Ga0190315_100133414F009582GAGMPARRGRREFIGGTGRAVKEARVDVVLQRVNEKIGSELDVSPSHIYRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGLLKVGISGAGFEEIDVLQGTATATWSDVLEFSFIPNRIRFESLDYPYCVMFSKDNVTWSEAVYVDEGTPRDYDICARYIKVRRYGGTNAQYWIVGMR
Ga0190315_100133415F011723GAGMIYNKGLRRDNSTNEGKEIFSLTSKEEEKYKVRRIVITDVNTNPLIMEVWLERDRIGENIPLEVASDIAPERVIDLDVEVPIGHTFSIKIKPQTSGNQGSVRGWVEYEIVG
Ga0190315_10013342F024941AGGAGGMAYYFWGRLGLTKGEEYRKLLERAWNLGWSQRQFFREARARGLGYAEALMREDWHRFGYVESARTYEGKLTQHIFFDEVVKKLHDEEGWSWKEIKEFLNERKDPYKWTPETKVKERIYKSYLREALPEKADT
Ga0190315_10013343F016235AGGAGGMDKNKISSSPPLFFHKKGRHRHGYQRCVAFVGIDKNDDYFGEGFPLCAVVKFKRPIYRYTPRTYELARLLATLKILYGKKYMEELLAWAELEYVRMRRRAEWLTIFGDGSD
Ga0190315_10013345F024940GAGMEREVIHKKIRTIKELREFITDYLIEHSEMRTKAMITANINAVLYEQGWMDALRTIRDLISKEGLLMYRYTEGEEEERAEDKNRDTF
Ga0190315_10013346F016098GGAGMSEERKFVYMRKTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRKIPNEDNARDLVYTWCDKCGGLRFFRKISEDKWRCEMCGTERTATELIEKVRSILDQGE
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