NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190315_1001839

Scaffold Ga0190315_1001839


Overview

Basic Information
Taxon OID3300021513 Open in IMG/M
Scaffold IDGa0190315_1001839 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8280
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0190315_100183914F009582AGAAGGMVRRRGRREFVTGTGRAVKEARVDVILQRVNEKIGSELNVSPSHIYRYGVNNIFQRAFAYLLGWKTNGEPQKVMVTEGGLLKVGIAGAGFEEIDVLQGTATVEWSGVLEFSFIPNRIRFESLDYPYCVKFSKDNITWSEAIYVDEATARDYDICAKYIKVKRYGGTDAKYWIVGMR
Ga0190315_10018392F024941AGGAGGMAYAFWGRLGITKGEQYRQLLERAWNLGWSQRRFFREARAKGLGYAEKLMREDWHRFGYVESARTYSGKLTQHIFFDEVVRKLHDKEGWSWKEIKEFLNERKDPYKWTPETKVKERIYKSYLTEALPEKADT
Ga0190315_10018393F016235AGGAGGMREAKIPSSPPLFLHKRWSHRRGYQKCIKYIGIDKNNEKYGYGFPLCCVIKFKFPIRRYSPRTSEIAKLLATLRLLYGEEYIEELFALAEVEYLKMRRRKVWLTHFGDGSE
Ga0190315_10018395F024940GAGMEREIIHKKIRTIKELREFIIDYLIEHSEQRAKAMFANNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVLDEKEERAEDKNRDTF
Ga0190315_10018396F016098AGGAGGMSKERKYVYMRKTRGGQGVRIRDGEIVYVASIRSIERFIQGEQEYVAFAKMPYRQIPNENSERNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTASELIEKVRSILDEGEQ
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