NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190315_1016222

Scaffold Ga0190315_1016222


Overview

Basic Information
Taxon OID3300021513 Open in IMG/M
Scaffold IDGa0190315_1016222 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2158
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F024940Metagenome203Y
F024941Metagenome203N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0190315_10162221F016098N/AEERKFVYMRKTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNEESDRDYVYTWCEKCGGLRFFRKISEDKWKCQTCGMEKTVRELINKLRSIMETE
Ga0190315_10162223F024940GGAGGVEMEREIIHKKIRSIKELREFITDYLIEHSEMRTKAMITANTNAVFYEQGWMDALRTIRDLISKEGLLMYRYTESEEEERAEDKNRDTF
Ga0190315_10162224F040961GAGMVNAVECRWSEEQAKGLLTFLIAEKKRHEKDIHNIERSIQRIKREFGFTDADIAKCEELAWLYVEF
Ga0190315_10162226F024941AGGAGGMAYTFWGRLGLTKGEEYRKLLEKAWNLGWSQRQFFREARARGLGYAEKLMREDWHRFGFVESARTYEGKLTQHVFFDEVVRKLHDKEGWSWKEIKEFLNERKDPRRWTPETKVKEKIYKSYLREALPEKADT
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