NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190315_1054876

Scaffold Ga0190315_1054876


Overview

Basic Information
Taxon OID3300021513 Open in IMG/M
Scaffold IDGa0190315_1054876 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1032
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016235Metagenome248Y
F024940Metagenome203Y
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0190315_10548761F016235AGGAGGMDKNKISSSPPLFSHKKGRHRHGYQRCVEYVGIDKNNDYFGEGFPLCAVVKFKQPIYRYTPRTYELARLLATLKILYGEEYMEELLAWAELEYVRMRRRRVW
Ga0190315_10548762F040961AGGTGGMVNAVECRWSEEQAKALITFLIAEKKRHERDIHNIEQSIQRIKREFSLTDADIAKCEELAWLYVEF
Ga0190315_10548764F024940N/AMEREIIHKKIRSIKELREFITDYLIEHSEQRAKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKKEREEDENRDTF
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