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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021519 Open in IMG/M |
| Scaffold ID | Ga0194048_10002161 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9756 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (74.19%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.697 | Long. (o) | -93.722 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F003965 | Metagenome / Metatranscriptome | 459 | Y |
| F007263 | Metagenome / Metatranscriptome | 354 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F013527 | Metagenome / Metatranscriptome | 270 | Y |
| F015208 | Metagenome / Metatranscriptome | 256 | Y |
| F017133 | Metagenome / Metatranscriptome | 242 | Y |
| F017829 | Metagenome / Metatranscriptome | 238 | Y |
| F085708 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194048_100021611 | F003965 | AGGTGG | MTTITMCREHNPMKSAISEVSDTQYTFCQDCEQNIERWYDDTDPERLPMWTEWRVR |
| Ga0194048_1000216111 | F007263 | AGG | MIKEYLDENEFYFIKDEIKIHCDEQQFIHVCKAHGEQMGCYFCEFDYSKDCECEG |
| Ga0194048_1000216113 | F015208 | GGAG | MYKITVANDSEPLHFIKEYSDELEAHTEFAKFIDWGFADEYSTVNLYTPSGKCYTKVFYREGRRVVTK |
| Ga0194048_1000216114 | F013527 | AGAAGG | MEIFEFNTFIDVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNNESVEV |
| Ga0194048_1000216115 | F011299 | GAGG | MTRKDYVAVAEILKYASDKTHPALFSKIVNDFAEMFAKDNERFDVTRFHEASGYHVTKLTSR |
| Ga0194048_1000216124 | F017829 | AGG | MANRFRVEIYDANKLNDVTIYSDQGVDKEYLTELVFSNMKNFSGKINAYVFDSVKKKKTTAMFIDESVVQKVKAQTSQLTKVGLGL |
| Ga0194048_1000216127 | F003422 | N/A | MTNELVSSIYTFVCDPDECDCLIQLTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATITSLNQTKEGNNMDGMTVENLPLSDSEKYNPDQLVTYKVISGYSDATYATDKVRNIEWELHNSRTNSKAVSSLQNKISLVKDIITEAYADSDDQDTLRTIAEALEIELTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGQIEIVDTEVCNVREN |
| Ga0194048_1000216128 | F000311 | GAG | MYFELTAPDRLSMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSRIRDKYNLTESYISDYEPTGYTGR |
| Ga0194048_1000216129 | F001043 | N/A | MNRQDTQGDNMSDYKDGFQDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGNQL |
| Ga0194048_100021613 | F085708 | GGA | MNRLITTLVQIALLVPALYMGRMMWREIVADFREWDKSH |
| Ga0194048_1000216131 | F001125 | GGCGG | MGDRANFGFRDSKGDTLYLYGHWAGSEMLHHLATAVAKAQPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSQVVFSLPIDKFVDKYSRLVM |
| Ga0194048_100021614 | F000447 | AGGAGG | MGYVEIFRMDEEGAGWVDLSEATPDELFNIELGLLEEGAFE |
| Ga0194048_100021615 | F017133 | AGG | MASNWTTFATVRDYPAGLMNLCPCGQVVLAPALYHEGQPHWDNPDRCKELWAISQK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |