NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10026384

Scaffold Ga0194048_10026384


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10026384 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2474
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F093488Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100263841F000324N/ACPCKQTTTNHIWLASILMVITSNPAHSLVYDGTSTYVYYASIGEGLPRHQHLYSHATICTGGSIIVRKEGKELVMTKDTQPVNLTANEWHEIEALEDNTVFINVFAEGKS
Ga0194048_100263845F093488AGGAGMADGLFYNDLREPFLTVAPTAVTLAATAKALYTASNFPVLGGQYFSRPGKKIMIRLFGQITTALTPGNGSFNVYYGSGADATGVLLMTGTPVALTASQTNLSWYAEIYVSCRTTGSAGTLFCDGWAKFNEAVLAGGVLLPASAPAASGACDLTAANIISVQYLRSGSTVETMQVVDMEVTALN
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