NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10001313

Scaffold Ga0210409_10001313


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10001313 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33073
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (45.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006299Metagenome / Metatranscriptome376Y
F006466Metagenome372Y
F010312Metagenome305N
F012762Metagenome277Y
F014110Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_1000131315F006466N/AVVAIVGIGGMLLRNRTAVWLASVSLLLLIVWGKIAGDINGLPGPDSALLLFQFMSVIFLMEASTTILTFDSAVNPLAGKNDDLSARARMQLVKWEQVQLFSLGKLTVASFGLSLGLLILGSLVSVSFNQIAFSGVLVLAAVVAIFILLTYRREPEERKRSLD
Ga0210409_100013134F006299N/AMTVSPEVLLRDVPEIVEFNQLKGRTTAEALTDLVNEFGIVYVTALTRQGCSGCETQKPLFKTLAEKMTGENATRVRFRSFHVNYQDGDKRESWRSKGIFGHAAYPTYMIHVKSHVGPLEIYRSVYPPMEELERQIKESFELADFYKTEAENGSRRSSERL
Ga0210409_100013135F014110GGAMKKEQQIVDLGKLPDKTGVAVDFLREHVKSVNGRVSTKGNQIQVEGLKHKEVKLLMHKFLRHNGLDDHRVLSQGGTLEIVPQHLVVHSRPQEGTPPPASATMPYLFPGASAAVPTSKKSKKS
Ga0210409_100013137F010312GAGMLRVFRLTLPAALLVSLTWMTLFTDTARQAVINSLGANANIIIFILGLFLVIGLYWVMGVYERKILYENHRTRPAF
Ga0210409_100013139F012762GAGLPTLLEEDPSLGTVDNFPTVLHARASFSFDINPESLQKALVSALASLRTNPKPREITIADRDGYLKGQLIFRPGIGNGDGFDVLDPKEEERVLHRIENRGSFSTLDLAIQLHYSVNDTGQHRVREDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIKIIIQELNVELTRDRYGQIELETINIT
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