NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10008989

Scaffold Ga0210409_10008989


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10008989 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10124
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001032Metagenome / Metatranscriptome800Y
F001686Metagenome / Metatranscriptome652Y
F001745Metagenome / Metatranscriptome643Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_100089895F001686AGGMNEFTAWIQSNWYALGNLFSQFAFLGAGVWFARKILKTMRASQEQVGALLKLSVTGAITDRHSSSAAAERSFASPSPYWLTPTEIPPVAPAELPQTGPSRWARASHSLMVWLQTPMSSGNAAPWRKALRWLQSPAGT
Ga0210409_100089897F001032GGAMGLGGMDTLHRKRNCKVGSCGGAAITSLDHQALCLNHFVQRCYEKLEHVDPRGRKFTTEPVDLAAMRAFIEECSRKALDVSLQSQNLSNLQRGRLLDILLWAGELFLLLRIPRLTLAQSIASSEDHLAVRATF
Ga0210409_100089898F001745N/AMKSAALKSHLPANGTSGFPPVTAMSIEFVAKPQEAHRVQAAIPAAIAGALKDLNGFAGCLVMISDHEARLVTVVTLWAGSDRAKCCSQNVRWLHALLKPYLDRCLRVQTMVAHLPVLPMQNFLPSIRPETNGADECSIVHNPISEDETVCVA
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