Scaffold Ga0210409_10021833

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210409_10021833

Scaffold Ga0210409_10021833

Overview

Basic Information
Taxon OID	3300021559 Open in IMG/M
Scaffold ID	Ga0210409_10021833 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6209
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F035434	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_100218331	F035434	N/A	MVRVALSLIPFFAVTLRRFVFNRMEREWLVGEVDALRPRQNGPLEQGLYILDPVGLTLVSGELENRADGADSVDRKYRAQRYLRRIVALTGAMQIGGAYSLQVGTTRFQVRDRHVSRMQDVSNPKCGYEETCFYPAHKEMPKAEQIATALLQLKNNPALFDGWAAQNG
Ga0210409_100218332	F000217	AGGAGG	MSAKILTFSSHGDTTLLEYDPATADMEEVNRVIAEYEVKTGAQPFDMTTGERIEKVTRRQNEVLMVHPIAGG

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