NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10023260

Scaffold Ga0210409_10023260


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10023260 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5999
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001973Metagenome / Metatranscriptome609Y
F050722Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_100232603F050722GGAGGMSVKYSIRVEKDGANVTARYDLRIPVDTTEFLASFELNVEGKNLIDTFLPQKAFTGTKFYILTNPSADTAVTFAITTSEAWTADGTDKLRGQKRYDDVSFSN
Ga0210409_100232608F001973AGGAGMVSAGWLLRTNKPPIQQGSLLKSNALVEVEHAESAYVQAIDKLAIEAKPQIDNPATPLMADYREKLLVLDSAIDDLRAQAGQNASNAHLRYELLAMYQEKQRTLEEILEAKR
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