NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10142538

Scaffold Ga0210409_10142538


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10142538 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2197
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010358Metagenome / Metatranscriptome305Y
F015939Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_101425383F015939GGAMGVAVRRECDASRASRGASMSTYDEMSPAERRQLMEALGSLTGLQEGPNGRPSNGTHYEYDPDLKRTVEVTPTGERFPVALAGDKLIRDSEKSVLRKGEAA
Ga0210409_101425385F010358N/AMDSMDKPDPYGEWVLLGTRQGPGGPRLATDEELLTAARAAWPRVLAHVRGELFDKELGPERTATAADIWDRVLQSVAKTRQRNKDHRPPISDLESYLIGVFHHRFNRLLRQEQRRAETIELVSSVLDLERFEAALDTEWAEQLERSIAVRQITDRMDAWTKKVWEARQYEY
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