NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10000088

Scaffold Ga0126371_10000088


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10000088 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64627
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (92.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065320Metagenome127Y
F096138Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100000882F065320GGAMKSFANCPNIQYAIVRASSTHDPPELLVLAYADEKSLRSLIAEPSIIALGFASRSAADAAGIFHQRVASQRMHAMSATRNANQRLSLASQFGWSRVTHALTCWKGYSDLYRAVQFIFATAVLVLYSRNVVSATIRTALGV
Ga0126371_100000885F096138GGAGGMGTWNPWENSSYFWVVICKNTRAHRDTNVMFGHKIPLAETDAFEALPVSGPFIVRCDECGQEHSYEPDKVLRVEFECPASFTPHPRFS
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Institute for Fundamental Biomedical Research
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