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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021560 Open in IMG/M |
| Scaffold ID | Ga0126371_10000195 Open in IMG/M |
| Source Dataset Name | Tropical forest soil microbial communities from Panama - MetaG Plot_4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46485 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (81.13%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Panama | |||||||
| Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000438 | Metagenome / Metatranscriptome | 1143 | Y |
| F022248 | Metagenome / Metatranscriptome | 215 | Y |
| F025326 | Metagenome / Metatranscriptome | 202 | Y |
| F026812 | Metagenome / Metatranscriptome | 196 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126371_1000019540 | F025326 | AGGAGG | MEGRVMSLTMQQKRGVFWALGIVIVATLTSLAWHQISIALSHCVFTFLK |
| Ga0126371_1000019548 | F026812 | AGGAG | VRCSLQRMAVGAAMCLFTIGAATARENMPSCADLRAQKEKVYGFHLTQLNEPQIEAKSKEIDAYWKQLQAAGQEGESCLKDMLASEKSDHLFQFDAASFLYQLDKSPESLAVVKDALVQTDFQETDPANYLSLALELSQRGVDIHALAAKLLLYPNAVIHISEHSLDLDSDTAALFLYGSMEPAQASKALVAKLDAPEPFVRAAAAHLLAEQMTEVALRTLSTWGGLADIKEDYRRNDILAVMKYEAPDAVGLANPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMREKKATQEELAKAVAESEPVYGIADHTAFQNAAVATLKAEDFETVRQARRKSLFNISDESLSEYLAYTQIMIRMLNHLDLYNDYRAH |
| Ga0126371_1000019552 | F022248 | AGGAG | MEIMLGFAGLVVMTLLALFAALVLQSALLHAMLWLIQPATADRVPVRVNVAHGAQLVVRALSARQ |
| Ga0126371_100001958 | F000438 | AGGAG | MDKFEEMGKRLDEELTRLRKYLEDEVAPVTEKRTAQFLREASEKLSEAARKLEARVAARTSQDSSETKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |