NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10002413

Scaffold Ga0126371_10002413


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10002413 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16094
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027568Metagenome / Metatranscriptome194Y
F050287Metagenome / Metatranscriptome145Y
F055071Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_1000241313F050287GGAGVTNEEKTSLKAACLQAATTLIAARDSTKGAVDVDECVKLAAELYCRVTTIEWQERR
Ga0126371_1000241320F055071AGGAMNADDFQQISDCWSSEVLPAAYYRATAARARRLQANATTPRVRQYLDTMIAHCEQLAGKVERRVTPSQLANNRRSERSMIRRRASKLMSRTY
Ga0126371_1000241324F027568AGGAGGMEYRQETIADGEFETYDEWARFGPQPPYRSATFRDAQGRRCITQQDFTRAREDGTFPVRYYWKTSETRKRRDV
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