NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10004869

Scaffold Ga0126371_10004869


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10004869 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11876
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016192Metagenome249Y
F050618Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100048693F016192N/AMNMKKTLLIACVILGSAAAFGQAGSSALSGQVTPLEMADHPQHASYSKMACESPLVGGGFDTYSYERGERPLWEFGPVSQPVPLGDVARAYRKDRVTAKKAEKILEKQGS
Ga0126371_100048694F050618GGAGLGSTSDKFDSLSSSNSLLVGIDGQMAVIKGGGKTNRPSIVGGGEIRLPDNTGNHAREYAFFGGPRFHARDLLIGFNAQLRQITLPVANVDNQFFARDRMRLFELPVVLQYKFGPDKRVFVEAQGAPEFTPHWHRPSSNQVALPNPRLDHGYFIRGTVGYTFAKFYYAKAMYENRYFKFVPDLGNPNNLYNWKTNLISGGIGVVF

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