NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10007460

Scaffold Ga0126371_10007460


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10007460 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9778
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016192Metagenome249Y
F016313Metagenome / Metatranscriptome248Y
F050618Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_1000746013F016313N/AIVGYTVLAAPLIVNETGIRAFCAEQDAVVRVDPAGVCSNTEAGILNFNPLNQ
Ga0126371_100074605F016192GGAMKTLLIASVVLCSAAAFGQAGSSALSGQVTPLEMADHPQHAEYSKMACERPLVGGGSDTYSFERGERPLWEFGPVSQPVPLGDIARAYRKDRVAAKKAEKVLEKQGS
Ga0126371_100074606F050618GGAGGMKRCKTHMVRACLLLLAAVPAYCQDRGRFGAILGSTSDKFDSLSSSNSLIVGIDGQMAVIKGGGKTNRPSIVGGGEIRLPDDTGNHAREYAFFGGPRFHAPHDLLIGFNAQLRQITLPTANVDNQFFARDRMRLFELPVVIQYKFGPGKRAWIEAQGAPEFTPHWHRPSSNKLVLPNPRLDHGYFIRGTVGYTFAKFYYAKAMYENRYFKFVPDLGNPNSLYNWKTNLISGGIGVIF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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