NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10044291

Scaffold Ga0126371_10044291


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10044291 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4232
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021365Metagenome219Y
F071525Metagenome / Metatranscriptome122Y
F072774Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100442915F071525AGGGGGMRWTVCAFAVATLICVAWYETSHAAPIASLTGIQTALGNITPVSSHRHRIVIPLTRHYEYRPYWWPQGQYHWSPFGMERWGYWCEGAGAHRLSC
Ga0126371_100442917F072774GGAMTKIAIPPDLAAMFAACEDAYEQATREGYAENPAVIAAVTALKSAWKTLHLENYKRMTAKGFFSVEFAAMRADRACQATREACIKLRAAIGQAALEHRLYDRCLKLNSRPAA
Ga0126371_100442918F021365GGAGVARAWRTVARKATPAALYWLVLSLITFLGISAVVRIEATRTRLSLVVSVVGVAFSAACFLERLLRDYVRTEIQPSDELSDARLTVVITGSLPKWLCRNKEHEGQQRRAEPRTRAPQTQEGLWCWLPS
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