NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10048852

Scaffold Ga0126371_10048852


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10048852 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4043
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001400Metagenome / Metatranscriptome704Y
F013938Metagenome / Metatranscriptome267Y
F037530Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100488523F001400GGAGVSVKVVAAINSMNKQGHYTRVFRLQDKMWVEIDGCMLASFSEIEGLVDGVQSFDELVDLFKKRHAEELREL
Ga0126371_100488525F037530N/AMDADDIKSKVNDRFEDVAGFRFHEDVRATIIFGELVKEHGQARVLRAFVGFREEFPKPFKAETALHEFTTNCKRYLK
Ga0126371_100488526F013938GGAMTDEKQARLEARARIDIRKLYETGKITLKDHASAVGYLRGVWFDHLSDAEIDDFICREIRELELSRNPPAE
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