NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126371_10061417

Scaffold Ga0126371_10061417


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10061417 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3627
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002186Metagenome / Metatranscriptome585Y
F014547Metagenome / Metatranscriptome262Y
F070422Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100614173F070422N/AMTNDRFIEGYSLIRDMQANDFLIALRIRAEHGVMIKKLCDFKERHKTTETESIAAMLTRAAERGDEEAISLLAAGALERCV
Ga0126371_100614175F014547GAGGMTPGEIRACYRLYAAHRKSHEICTFPGTILATSNAGDLDDLAVLLRPHSGLEGLAPDIGHGDPNDDLRPALAGSVHHLRKTLASFGAQLFGRGALVGR
Ga0126371_100614176F002186AGGAMAWFGVGSGSRRAEPQRVQRFVQADRVVVEVFADLHEARRLKSKFPAMSRGALQEFEHKAWNRLIDYLIKLPPLPSDN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.