NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10106211

Scaffold Ga0126371_10106211


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10106211 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2806
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001440Metagenome / Metatranscriptome694Y
F001673Metagenome / Metatranscriptome654Y
F029854Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_101062112F029854GAGGMKPSALRIKRLLAKVEAELACNARARRYVFHPDEVAEAEAQGLPYVLVPRVLSSREWMERYAKQ
Ga0126371_101062113F001673GAGGVRRPWVALASFVAVLLVLALGHRWSMTASWFTSDSKCRERHATPWFVERLGIDCDRLLRARLWKLYDEGQFGRSRRGQGAVEYMKHLLEHPDE
Ga0126371_101062114F001440AGGMAKAKSIGWAIYVAGFVIWLFGYLSTGHAATFDWDAVAPWWISSFVPNLEAEFGLALMFASMIPIYWRAGRKRQGAA

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